Rob Edwards
@linsalrobProfessor of CS and Biology Writing bioinformatics code to study viruses, phages, and metagenomes.
Language Breakdown
Lines of code distribution across 85 owned repositories
I-Shaped Developer
I-shapedSpecialist — deep expertise in Jupyter Notebook
Collaboration Network
Global Impact visualization
Repos
159
PRs
0
Growth
+18%
Top Collaborators
No collaborator data yet.
Coding Streak
Contribution activity over the past year
Heng Li
@lh3
Francine Camacho
@frcamacho
Bas E. Dutilh
@dutilh
Przemysław Decewicz
@pdec
Jack Morgan
@jackm-morgan
Top Repositories
Robs manual for the computational genomics and bioinformatics class.
Match up paired end fastq files quickly and efficiently.
Prediction of prophages from bacterial genomes
Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
Get, parse, and extract information from the SRA metadata files
Code from the Edwards lab, including bioinformatics, image analysis and more. All this code is created and maintained by folks at Rob Edwards' bioinformatics lab at Flinders University
Convert genbank files to a swath of other formats
A python implementation of flux balance analysis to model microbial metabolism
Comparisons of multiple different prophage predictions
PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE allows automatic separation of the data.
Open Source Impact
Contributions to external projects
